Xiao X, Djurisic M, Hoogi A, Sapp RW, Shatz CJ, Rubin DL. Automated dendritic spine detection using convolutional neural networks on maximum intensity projected microscopic volumes. Journal of Neuroscience Methods 309 (2018) 25–34.

Djurisic M, Brott BK, Saw NL, Shamloo M, Shatz CJ. Activity-dependent modulation of hippocampal synaptic plasticity via PirB and endocannabinoids. Mol Psychiatry. 2018 [Epub ahead of print]

Nguyen-Vu TB, Zhao GQ, Lahiri S, Kimpo RR, Lee H, Ganguli S, Shatz CJ, Raymond JL. A saturation hypothesis to explain both enhanced and impaired learning with enhanced plasticity. Elife. 2017 Feb 24;6.

Vidal GS, Djurisic M, Brown K, Sapp RW, Shatz CJ 2016 Cell-Autonomous Regulation of Dendritic Spine Density by PirB eNeuro 3(5)

Adelson JD, Sapp RW, Brott BK, Lee H, Miyamichi K, Luo L, Cheng S, Djurisic M, Shatz CJ (2014) Developmental Sculpting of Intracortical Circuits by MHC Class I H2-Db and H2-Kb. Cereb Cortex 26(4):1453-63

Lee H, Brott BK, Kirkby LA, Adelson JD, Cheng S, Feller MB, Datwani A, Shatz CJ (2014) Synapse elimination and learning rules co-regulated by MHC class I H2-Db. Nature 509(7499):195-200

Bochner DN, Sapp RW, Adelson JD, Zhang S, Lee H, Djurisic M, Syken J, Dan Y, Shatz CJ (2014) Blocking PirB up-regulates spines and functional synapses to unlock visual cortical plasticity and facilitate recovery from amblyopia. Sci Transl Med 6(258):258ra140

Djurisic M, Vidal GS, Mann M, Aharon A, Kim T, Ferrao Santos A, Zuo Y, Hubener M, Shatz CJ (2013) PirB regulates a structural substrate for cortical plasticity. PNAS 110(51):20771-6

Kim T, Vidal GS, Djurisic M, William CM, Birnbaum ME, Garcia KC, Hyman BT, Shatz CJ (2013) Human LilrB2 Is a Beta-Amyloid Receptor and Its Murine Homolog PirB Regulates Synaptic Plasticity in an Alzheimer’s Model. Science 341:1399-1404

William C, Andermann M, Goldey G, Roumis D, R. Reid, Shatz C, Albers M, Frosch M, Hyman B (2012) Synaptic plasticity defect following visual deprivation in Alzheimer’s disease model transgenic mice. J. Neurosci. 32:8004-11

Adelson JD, Barreto GE, Xu L, Kim T, Brott BK, Ouyang YB, Naserke T, Djurisic M, Xiong X, Shatz CJ, Giffard RG (2012) Neuroprotection from stroke in the absence of MHCI or PirB. Neuron 73 (6): 1100-7.

Datwani A, McConnell MJ, Kanold PO, Micheva KD, Busse B, Shamloo M, Smith SJ, Shatz CJ (2009) Classical MHCI molecules regulate retinogeniculate refinement and limit ocular dominance plasticity. Neuron 64 (4):463-70.

McKellar, CE, Shatz, CJ (2009) Synaptogenesis in purified cortical subplate neurons. Cereb Cortex 19 (8): 1723-37.

Shatz, CJ (2009) MHC class I: an unexpected role in neuronal plasticity. Neuron 64 (1): 40-5.

Kanold PO, Kim YA, Grandpre T, Shatz CJ (2009) Co-regulation of ocular dominance plasticity and NMDA Receptor subunit expression in Glutamic Acid Decarboxylase-65 Knock-Out Mice. J. Physiol. Epub 04/30/09 PMID: 19406876.

McConnell, MJ, Huang, YH, Datwani, A, Shatz, CJ (2009) H2-Kb and H2-Db regulate cerebellar long term depression and limit motor learning. PNAS 106: 6784-6789. PMCID: 2672503.

Atwal JK, Pinkston-Gosse J, Syken J, Stawicki S, Wu Y, Shatz CJ, Tessier-Lavigne MT (2008) PirB is a functional receptor for myelin inhibitors of axonal regeneration. Science 322: 967-970. PMCID: 2672503.

Butts, DA, Kanold, PO, Shatz CJ (2007) A burst-based ‘Hebbian’ learning rule at retinogeniculate synapses links retinal waves to activity dependent refinement. PLoS Biology 5: E61.

Goddard, CA, Butts, D, Shatz, CJ (2007) Regulation of CNS synapses by neuronal MHC Class I. PNAS 104: 6828-6833.

Syken, J., GrandPe, T., Kanold, P.O., Shatz, C.J. (2006) PirB Restricts Ocular-Dominance Plasticity in Visual Cortex. Science 313:1795-1800.

Kanold, PO, Shatz, CJ (2006) Subplate neurons regulate maturation of cortical inhibition and outcome of ocular dominance plasticity. Neuron 51: 627-638.

Majdan, M. Shatz, CJ (2006) Effects of visual experience on activity-dependent gene regulation in cortex. Nature Neuroscience 9:650-9. Epub 2006 Apr 2.

Tagawa, Y,, Kanold, PO, Majdan, M, Shatz, CJ (2005) Multiple periods of functional ocular dominance plasticity in mouse visual cortex. Nature Neuroscience 3:380-388.

Syken J, and Shatz CJ (2003) Expression of T Cell Receptor Beta Locus in CNS neurons. PNAS 100:13048-13053.

Kanold, P.O., Kara, P., Reid, R.C., and Shatz, C.J. (2003) Role of subplate neurons in functional maturation of visual cortical columns. Science 301:521-525.

McQuillen, P.S., Sheldon, R.A., Shatz, C.J. and Ferrario, D.M. (2003) Selective vulnerability of subplate neurons after early neonatal hypoxic-ischemia. J. Neurosci.23: 3308-3315.

McQuillen, P.S., DeFreitas, M.F., Zada, G. and Shatz, C.J. (2002) A novel role for p75NTR in subplate growth cone complexity and visual thalamocortical innervation. J. Neurosci. 22: 3580-3593.

Stellwagen, D, Shatz, CJ (2002) An instructive role for retinal waves in the development of retinogeniculate connectivity. Neuron 33:357-367.

DeFreitas, M.F., McQuillen, P.S. and Shatz, C.J. (2001) A novel p75NTR signaling pathway promotes survival, not death, of immunopurified neocortical subplate neurons. J. Neurosci. 21:5121-5129.

Huh, G.S., Du, H.P., Boulanger, L., Riquelme, P., Brotz, T.M., and Shatz, C.J. (2000) Functional requirement for Class I MHC in CNS development and plasticity. Science 290:2155-2159.

Braisted, J.E., Catalano, S.M., Stimac, R., Kennedy. T.E., Tessier-Lavigne, M., Shatz, C.J., and O’Leary, D.D.M., (2000) Netrin-1 promotes thalamic axon growth and is required for proper development of the thalamocortical projection. JNeurosci. 20: 5792-5801.

Lein, E.S. and Shatz, C.J. (2000) Rapid regulation of BDNF mRNA within eye-specific circuits during ocular dominance column formation, J. Neurosci. 20:1470-1483.

Lein, E.S., Hohn, A. and Shatz, C.J. (2000) Dynamic regulation of BDNF and NT-3 expression during visual system development. J. Comp. Neurol. 420: 1-18

Corriveau, R.A., Shatz, C.J. and Nedivi, E. (1999) Dynamic regulation of CPG15 during activity-dependent synaptic development in the mammalian visual system. J. Neurosci. 19: 7999-8008.

Stellwagen, D., Shatz, C.J., and Feller, M.B. (1999) Dynamics of retinal waves are controlled by cyclic AMP. Neuron 24: 673-685.

Lein, E.S., Finney, E.M., McQuillen, P.S. and Shatz, C.J. (1999) Subplate neuron ablation alters neurotrophin expression and ocular dominance column formation., PNAS 96: 13491-13495.

Butts, D., Feller, M.B., Shatz, C.J. and Rokhsar, D. (1999) Retinal waves are governed by collective network properties. J. Neurosci. 19: 3580-3593.

Finney, E.M. and Shatz, C.J. (1998) Establishment of patterned thalamocortical connections does not require nitric oxide synthase. J. Neurosci., 18: 8826-8838.

Corriveau, R.A., Huh, G.S. and Shatz, C.J. (1998) Regulation of Class I MHC gene expression in the developing and mature CNS by neural activity. Neuron, 21: 505-520.

Catalano, S.M. and Shatz, C.J. (1998) Activity-dependent cortical target selection by thalamic axons. Science 281: 559-562.

Finney, E.M., Stone, J.R. and Shatz, C.J. (1998) A major glutamatergic projection from subplate into visual cortex during development. J. Comp. Neurol. 398: 105-118.

Catalano, S.M., Messersmith, E.K., Goodman, C.S., Shatz, C.J., and Chedotal, A. (1998) Many major CNS axon projections develop normally in the absence of semaphorin III. Molecular and Cellular Neurosci. 11: 173- 182.

Penn, A.A., Riqueleme, P.A., Feller, M.B., and Shatz, C.J. (1998) Spontaneous activity drives competition in retinogeniculate patterning. Science 279: 2108-2112.

Messersmith, E.K., Feller, M.B., Zhang, H. and Shatz, C.J. (1997) Migration of neocortical neurons in the absence of functional NMDA receptors. Molelcular and Cellular Neurosci. 9: 347-357.

Catalano, S.M., Chang, C.K., and Shatz, C.J. (1997) Activity-dependent regulation of NMDAR1 immunoreactivity in the developing visual cortex. J. Neurosci. 17: 8376-8390.

Feller, M.B., Butts, D., Aaron, H., Stellwagen, D., Rokhsar, D., and Shatz, C.J. (1997) Dynamic properties shape spatiotemporal properties of retinal waves. Neuron 19: 293-306.

Cabelli, R.J., Shelton, D.L., Segal, R.A., and Shatz, C.J. (1997) Blockade of endogenous ligands of TrkB inhibits ocular dominance column formation. Neuron 19: 63-76.

Campbell, G., A.S. Ramoa, M.P. Stryker and C.J. Shatz. (1997) Dendritic development of retinal ganglion cells after prenatal infusion of tetrodotoxin. Visual Neurosci. 14: 779-788.

Katz, L.C. and C.J. Shatz. (1996) Synaptic activity and the construction of cortical circuits. Science, 274: 1133-1138.

Shatz, C.J. (1996 ) Emergence of Order in Visual System Development. PNAS 93: 602-608.

Cabelli, R.J., K. L. Allendoerfer, M.J. Radede, A.A. Welcher, S.C. Feinstein and C.J. Shatz. (1996) Changing patterns of expression and subcellular localization of trkb in the developing visual system. J. Neurosci.16: 7965-7980.

Honig, L.S., Herrmann, K. and C.J. Shatz (1996) Developmental changes revealed by immunohistochemical markers in human cerebral cortex. Cerebral Cortex 6: 794-806.

Mooney, R., A.A. Penn, R. Gallego and C.J. Shatz (1996) Thalamic relay of spontaneous retinal activity prior to vision. Neuron 17: 863-874.

Feller, M.B., D.P. Wellis, D. Stellwagen, F.S. Werblin and C.J. Shatz (1996) Requirement for cholinergic synaptic transmission in the propagation of spontaneous retinal waves. Science 272:1182-1187.

Herrmann, K. and C.J. Shatz (1995) Blockade of action potential activity alters initial arborization of thalamic axons within layer 4. PNAS 92: 11244-11248.

Messersmith, E.K., E.D. Leonardo, C.J. Shatz, M. Tessier-Lavigne, C.S. Goodman and A.L. Kolodkin (1995) Semaphorin III can function as a selective chemorepellant to pattern sensory projections in the spinal cord. Neuron 14: 949-959.

Cabelli, R.J., A. Hohn and C.J. Shatz (1995) Inhibition of ocular dominance column formation by infusion of NT-4/5 or BDNF. Science 267: 1662-1666.

Wong, R.O.L., A. Chernjavsky, S.J. Smith and C.J. Shatz (1995) Early functional neural networks in the developing retina. Nature 374: 716-718.